The upcoming installment's story takes place amidst signs of postwar reconstruction in the winter of 2028. Tensions are rising in New Port City as demonstrations are held concerning the interests of foreign cartels. This leads to a shooting incident involving riot police. It all started with a cyberbrain infection released by the terrorist "Fire Starter." An independent offensive unit led by Makoto Kusanagi entrusts the suppression of the situation to their ghosts and aims for their own justice. Below the surface of the incident, lies the "tin girl" Emma and the "scarecrow man" Burinda Junior. As Kusanagi deals with the incident, she draws near to what those two ghosts were seeking.

The story of this fourth installment takes place amidst signs of postwar reconstruction in the winter of 2028. Tensions are rising in New Port City as demonstrations are held concerning the interests of foreign cartels. This leads to a shooting incident involving riot police. It all started with a cyberbrain infection released by the terrorist "Fire Starter." An independent offensive unit led by Motoko Kusanagi entrusts the suppression of the situation to their ghosts and aims for their own justice. Below the surface of the incident, lies the "tin girl" Emma and the "scarecrow man" Burinda Junior. As Kusanagi deals with the incident, she draws near to what those two ghosts were seeking.

Short 3D CG Specials included in the Blu-rays of the Ghost in the Shell: Arise movies.

The anime's story is set in 2027, one year after the end of the fourth non-nuclear war. New Port City is still reeling from the war's aftermath when it suffers a bombing caused by a self-propelled mine. Then, a military member implicated in arms-dealing bribes is gunned down. During the investigation, Public Security Section's Daisuke Aramaki encounters Motoko Kusanagi, the cyborg wizard-level hacker assigned to the military's 501st Secret Unit. Batou, a man with the "eye that does not sleep," suspects that Kusanagi is the one behind the bombing. The Niihama Prefectural Police detective Togusa is pursuing his own dual cases of the shooting death and a prostitute's murder. Motoko herself is being watched by the 501st Secret Unit's head Kurutsu and cyborg agents.

Freed of her responsibilities with the 501 Organization, Motoko Kusanagi must now learn how to take orders from Aramaki. Someone hacks the Logicomas, and Batou enlists the help of former army intelligence officer Ishikawa and former air artillery expert Borma. Kusanagi also seeks to enlist ace sniper Saito and undercover cop Paz into the new Public Security Section 9. The two groups rival each other in a case involving a man who receives false memories of a refugee transport operation.

The heavily cyborged police officer Batou, newly partnered with the mostly-human Togusa after the diappearance of Major Motoko Kusanagi, is assigned to investigate a series of murders committed by prototype "sexaroids" - female androids created for sex.

In the future, life between the digital and physical world has been blurred. The boundary of technology and humanity has been stretched beyond imagination with lives being led in both the electronic and physical worlds. With the melding of man and machine – a new cybernetic level of existence is being created – An existence that continues to redefine mankind.

AD 2034. It has been two years since Kusanagi Motoko left Section 9. Togusa is now the new leader of the team, that has considerably increased its appointed personnel. The expanded new Section 9 confronts a rash of complicated incidents, and investigations reveal that an ultra-wizard hacker named the Puppeteer is behind the entire series of events.In the midst of it all, Batou, who was following the case on a separate track, encounters Motoko. But after saying, "Stay away from the Solid State Society", she quickly leaves. This makes Batou wonder: Could Motoko be the Puppeteer?The series of intriguing incidents that Section 9 faces gradually link together — almost artistically. Who is the Puppeteer? What will happen to Batou's relationship with Motoko? What is the full truth behind this carefully planned perfect crime? And what will the outcome be? Mysteries surround the Solid State Society...

A.D. 2034. It has been two years since Motoko Kusanagi left Section 9. Togusa is now the new leader of the team, that has considerably increased its appointed personnel. The expanded new Section 9 confronts a rash of complicated incidents, and investigations reveal that an ultra-wizard hacker named the Puppeteer is behind the entire series of events. In the midst of all, Batou, who was stalking the case on a separate track, encounters Motoko. She goes away after saying, "Stay away from the Solid State Society." Batou is left with a doubt in his mind. Could Motoko be the Puppeteer? The series of intriguing incidents that Section 9 faces gradually link together almost artistically. Who is the Puppeteer? What will happen to Batou's relationship with Motoko? What is the full truth behind this carefully planned perfect crime? And what will the outcome be? Mysteries surround the Solid State Society...

In 2024, the terrorist incident known as "The Laughing Man Incident" occurred in which Ernest Serano, president of the groundbreaking micromachine company, Serano Genomics, was kidnapped and ransomed. One day, the case having remained unsolved for six years, Detective Yamaguchi, who has been investigating "The Laughing Man Incident," sends word that he wants to meet with Togusa from Public Safety Section 9. However, soon after sending this message, Yamaguchi, crucial to the success of the case, dies in an accident. Many days pass and in the midst of a police interview relay concerning suspicions behind interceptors, a forewarning is received from "The Laughing Man" of his next crime. The incorporeal hacker begins to move once again.

In 2024, the terrorist incident known as "The Laughing Man Incident" occurred in which Ernest Serano, president of the groundbreaking micromachine company, Serano Genomics, was kidnapped and ransomed. One day, the case having remained unsolved for six years, Detective Yamaguchi, who has been investigating "The Laughing Man Incident," sends word that he wants to meet with Togusa from Public Safety Section 9. However, soon after sending this message, Yamaguchi, crucial to the success of the case, dies in an accident. Many days pass and in the midst of a police interview relay concerning suspicions behind interceptors, a forewarning is received from "The Laughing Man" of his next crime. The incorporeal hacker begins to move once again.

In the not so distant future, mankind has advanced to a state where complete body transplants from flesh to machine is possible. This allows for great increases in both physical and cybernetic prowess and blurring the lines between the two worlds. However, criminals can also make full use of such technology, leading to new and sometimes, very dangerous crimes. In response to such innovative new methods, the Japanese Government has established Section 9, an independently operating police unit which deals with such highly sensitive crimes. Led by Daisuke Aramaki and Motoko Kusanagi, Section 9 deals with such crimes over the entire social spectrum, usually with success. However, when faced with a new A level hacker nicknamed "The Laughing Man," the team is thrown into a dangerous cat and mouse game, following the hacker's trail as it leaves its mark on Japan.