On the mechanical planet of Cybertron live super robotic organisms known as Transformers. There, mainly consisting of convoys, the Cybertron army, and their old enemy Destron fell into conflict to gain hold of a new power to join their side. A new breed of Transformers known as the Microns. But, grieving over the battle the Microns set off to the other end of the universe. 4 million years later, on Earth, 3 young children activated a mysterious panel inside a cave. And somehow, that was the dormant Micron...

Three hundred years have passed since the Great War between the Autobots and Decepticons. Cybertron is ruled by the Maximals, the descendants of the Autobots. They are at peace with the Predacons, the descendants of the Decepticons. One particular Predacon is looking to start trouble again. Megatron gathered a crew and stole Cybertron’s most guarded relic: the golden disk. His escape was interrupted by a Maximal exploration ship led by Optimus Primal. The Axalon followed the Predacons into transwap space and both ships crash landed on an unknown planet. Megatron’s plan was successful, the planet they crashed on was loaded with energon. As a matter of fact, there was to much energon for them to handle. Both sides had to create alternate forms based on local animal life to survive on this planet. Now its up to Optimus Primal and the Maximals to stop Megatron from gaining enough energon to conquer the galaxy.

Forced to abandon their home planet of Cybertron due to the threat of the Blackhole, Optimus Prime prepares to lead his autobot warriors to Earth. Just as they are leaving they are confronted by Vector Prime who warns Optimus Prime of the threat to the galaxy if the four Cyber Planet Keys are not gathered in time. However, Megatron has plans of his own for the universe. As they embark on the search, they land on new planets which are inhabited by different Transformer races as well as the Convoys who lead these planets.

Forced to abandon their home planet of Cybertron due to the threat of the Blackhole, Optimus Prime prepares to lead his autobot warriors to Earth. Just as they are leaving they are confronted by Vector Prime who warns Optimus Prime of the threat to the galaxy if the four Cyber Planet Keys are not gathered in time. However, Megatron has plans of his own for the universe. As they embark on the search, they land on new planets which are inhabited by different Transformer races as well as the Convoys who lead these planets.

Headmasters starts with Galvatron leading a new batch of Destrons to wage war on Cybertron, the Destron Headmasters. The Cybertrons are rescued by the arrival of the Cybertron Headmasters, led by Fortress (Cerebros, the head of Fortress Maximus). It is revealed that Fortress Maximus left Cybertron millions of years ago in search of energy, and have finally managed to come home. He explains that the Headmasters are from a planet called Master; the human-sized robots who live there built themselves Transformers-sized bodies. They can then transform themselves into the heads of the robots, and have now joined the Cybertron-Destron war.

Headmasters starts with Galvatron leading a new batch of Destrons to wage war on Seibertron, the Destron Headmasters. The Cybertrons are rescued by the arrival of the Cybertron Headmasters, led by Fortress (Cerebros, the head of Fortress Maximus). It is revealed that Fortress left Seibertron millions of years ago in search of energy, and have finally managed to come home. He explains that the Headmasters are from a planet called Master; the human-sized robots who live there built themselves Transformers-sized bodies. They can then transform themselves into the heads of the robots, and have now joined the Cybertron-Destron war.

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Chronicles the epic battle between the Decepticons and the Autobots in their mission to defend Earth and one day restore their home planet of Cybertron.

It has been 10 years since the fateful battle with Unicron. Many of the Decepticons who fought in the battle against Unicron have joined forces with the Autobos to mine for Energon, an alternate energy source. But a new source of evil has a risen, Alpha Q who plans to steal the Energon from the Autobots with the help of Scorponok and the Terrorcons. This new evil is trying to revive Megatron and Unicron in order to rekindle the old flames of war.

It has been 10 years since the fateful battle with Unicron. Many of the Decepticons who fought in the battle against Unicron have joined forces with the Autobos to mine for Energon, an alternate energy source. But a new source of evil has a risen, Alpha Q who plans to steal the Energon from the Autobots with the help of Scorponok and the Terrorcons. This new evil is trying to revive Megatron and Unicron in order to rekindle the old flames of war.

Episode 43.5, "Distribution", is a comedic special show which commemorates 500 episodes of Transformers in Japan (however, since that total includes assorted Japanese series, the west is still some distance away from this number). When aired in Japan, it did not air in the usual timeslot for Superlink, and is not in any sort of chronological order - It features the Autobots playing a video game training simulator, which they certainly do not have time to do between episodes 42 and 44.

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